Publications _{(reverse chronological order)}

2025

• Choi H, Yu O, Eyun S (2025)  Evolutionary insights into hemocyanin molecular phenotypic adaptation in deep-sea hydrothermal vent shrimps
  Marine Pollution Bulletin 215:117872
  ✪ Supplemental Materials



• Nam J, Woo H, Yang J, Kim SJ, Lee KP, Yu JH, Park TJ, Eyun S, Yang S (2025)  Blockade of ZMIZ1-GATA4 axis regulation restores youthfulness to aged cartilage
  Advanced Science 12:202404311
  (언론보도 )
  



• Doh H, Lee C, Kim NY, Park YY, Kim E, Choi C, Eyun S (2025)  Genomic diversity and comparative phylogenomic analysis of genus Norovirus
  Scientific Reports 15:5412



• Choi H, An YK, Lee CJ, Song C, Kim E, Lee CE, Cho SJ, Eyun S (2025)  Genome assembly, gene content, and plastic gene expression responses to salinity changes in the Brackishwater Clam (Corbicula japonica) from a dynamic estuarine environment
  Journal of Hazardous Materials 483:136627
  ✪ Supplemental Materials
(언론보도 )



• Kim D, Ryu S, Kim J, Eyun S, Jeong MK (2025)  The complete mitochondrial genome of the korean endemic polychaete Phyllodoce koreana (Lee & Jae, 1985) from Jindong bay, Korea, with additional morphological and ecological features
  Journal of Marine Science and Engineering 13:223

2024

• Yoo S, Kim H, Moon H, Jeon MS, Cho Y, Jeon C, Eyun S, Kang H (2025)  Genome-wide identification and biochemical characterization of alcohol acyltransferases for aroma generation in Wickerhamomyces subpelliculosus isolates from fermented Food
  Journal of Agricultural and Food Chemistry 72:28194



• Song C, Purnaningtyas DW, Choi H, Jeon D, Kim S, Hwang H, Kim C, Lee YH, Eyun S (2024)  Do red tide events promote an increase in zooplankton biodiversity?
  Environmental Pollution 361:124880
  (언론보도 )
  



• Jun J, Kim E, Jeon D, Yang J, Jeong HG, Jung H, Kim T, Eyun S (2024)  Comparative genomic analysis of copepod humoral immunity genes with sex-biased expression in Labidocera rotunda
  Journal of Invertebrate Pathology 207:108198
  ✪ Supplemental Materials



• Choi H, Gwon Y, An Y, Eyun S (2024)  Positive selection of mitochondrial cytochrome b gene in the marine bivalve Keenocardium buelowi (Bivalvia, Cardiidae)
  Animals 14:2812



• Jeon D, Song C, Jeong HG, Ohtsuka S, Lee W, Soh HY, Eyun S (2024)  An integrated phylogenomic approach for potential host-associated evolution of monstrilloid copepods
  Oceanography and Marine Biology: An Annual Review 62:350-375
  ✪ Supplemental Materials



• Kim E, Doh H, Yang J, Eyun S (2024)  The occurrence of positive selection on BicA transporter of Microcystis aeruginosa
  Ecotoxicology and Environmental Safety 283:116795



• Woo S, Hossain MI, Jung S, Yeo D, Yoon D, Hwang S, Doh H, Eyun S, Choi C (2024)  Whole genome sequencing and genome characterization of Aichivirus isolated from Korean adults
  Journal of Medical Virology 96:e29902



• Choi H, Nam J, Yang S, Eyun S (2024)  Highly contiguous genome assembly and gene annotation of the short-finned eel (Anguilla bicolor pacifica)
  Scientific Data 11:952
  ✪ Supplemental Materials



• Gong EY, Jung D, Woo H, Song J, Choi E, Jo SG, Eyun S, Kim S, Park YY (2024)  Genomic analysis uncovers that cold-inducible RNA binding protein is associated with estrogen receptor in breast cancer
  Genes & Genomics 46:899-907



• Lee H, Nam J, Jang H, Park YS, Son MH, Lee IH, Eyun S, Jeon J, Yang S (2024)  BRD-2 specific inhibitor, BBC0403, inhibits the progression of osteoarthritis pathogenesis in osteoarthritis-induced C57BL/6 male mice
  British Journal of Pharmacology 181:2528-2544



• Park SH, Ju JS, Woo H, Yun HJ, Lee SB, Kim SH, Győrffy B, Kim E, Kim H, Han HD, Eyun S, Lee JH, Park YY (2024)  The m⁶A writer RBM15 drives the growth of triple-negative breast cancer cells through the stimulation of serine and glycine metabolism
  Experimental and Molecular Medicine 56:1373–1387



• Shin JS, Song C, Choi H, Yang SH, Kwon KK, Eyun S, Choi KS (2024)  The complete mitochondrial genome of the chemosymbiotic lucinid bivalve Pillucina pisidium (Dunker, 1860) occurring in seagrass Zostera marina bed in a lagoon in Jeju island, Korea
  Journal of Marine Science and Engineering 12:847



• Kang J, Kwak YS, Kim E, Gwon Y, Choi HG, Eyun S (2024)  Transcriptome and functional analyses of phenotypic plasticity in sea grape Caulerpa okamurae
  Physiologia Plantarum 176:e14339
  ✪ Supplemental Materials



• Han DM, Baek JH, Choi DG, Jeon M, Eyun S, Jeon CO (2024)  Comparative pangenome analysis of Aspergillus flavus and Aspergillus oryzae reveals their phylogenetic, genomic, and metabolic homogeneity
  Food Microbiology 119:104435



• Kim E, Jeon D, Park Y, Woo H, Eyun S (2024)  Dietary exposure of the water flea Daphnia galeata to microcystin-LR
  Animal Cells and Systems 28:25-36


✪ Supplemental Materials

2023

• Yun HJ, Li M, Guo D, Jeon SM, Park SH, Lim JS, Lee SB, Liu R, Du L, Kim SH, Shin TH, Eyun S, Park YY, Lu Z, Lee JH (2023)  AMPK-HIF-1α signaling enhances glucose-derived de novo serine biosynthesis to promote glioblastoma growth
  Journal of Experimental & Clinical Cancer Research 42:340



• Kim M, Choi H, Kim H, Kang J, Jeong HG, Eyun S, Kang JH (2023)  A complete characterization of the mitochondrial genome, ecological distribution, and morphological features of the marine gastropod mollusk Lophocochlias parvissimus (Gastropoda, Tornidae)
  Journal of Marine Science and Engineering 11:2307



• Son YJ, Jeon MS, Moon HY, Kang J, Jeong DM, Lee DW, Kim JH, Lim JY, Seo JA, Jin JH, Bahn YS, Eyun S, Kang HA (2023)  Integrated genomics and phenotype microarray analysis of Saccharomyces cerevisiae industrial strains for rice wine fermentation and recombinant protein production
  Microbial Biotechnology 16:2161-2180
  ✪ Supplemental Materials



• Lee H, Nam J, Jang H, Park YS, Son MH, Lee IH, Eyun S, Jeon J, Yang S (2023)  Novel molecule BBC0901 inhibits BRD4 and acts as a catabolic regulator in the pathogenesis of osteoarthritis
  Biomedicine & Pharmacotherapy 166:115426



• Ryu KB, Jo GH, Gil YC, Jeon D, Choi NR, Jung SH, Jo S, An HS, Lee HY, Eyun S, Cho SJ (2023)  Eye development and developmental expression of crystallin genes in the long arm octopus, Octopus minor
  Frontiers in Marine Science 10:1136602



• Jeon J, Lee H, Kang LJ, Jeon MS, Kim SJ, Choi C, Kim KW, Yang DJ, Lee S, Bae YS, Choi WI, Eyun S, Yang S (2023)  Blockade of Activin receptor IIB protects arthritis pathogenesis by non-amplification of Activin A-ACVR2B-NOX4 axis pathway
  Advanced Science 10:2205161
  (언론보도 )
  



• Jeon MS, Jeong DM, Doh H, Kang HA, Jung H, Eyun S (2023)  A practical comparison of the next-generation sequencing platform and assemblers using yeast genome
  Life Science Alliance 6:e202201744



• Jeong DM, Kim HJ, Jeon MS, Yoo SJ, Moon HY, Jeon E, Jeon CO, Eyun S, Kang HA (2023)  Genomic and functional features of yeast species in Korean traditional fermented alcoholic beverage and soybean products
  FEMS Yeast Research 23:foac066



• Lee IG, Joo YH, Jeon H, Jeong R, Kim EH, Chung H, Eyun S, Kim J, Seo YJ, Hong SH (2023)  Galectin-4 increases the ability of M2 macrophages to enhance antiviral CD4+ T-cell responses
  Journal of Leukocyte Biology 113:71-83

2022

• Hwang SM, Ha YJ, Koo GB, Noh HJ, Lee AY, Kim BJ, Hong SM, Michael J. Morgan, Eyun S, Lee D, Roe JS, Lee Y, Kim YS (2022)  LCK-mediated RIPK3 activation controls double-positive thymocyte proliferation and restrains thymic lymphoma by regulating the PP2A-ERK axis
  Advanced Science 9:2204522



• Jeong DM, Yoo SJ, Jeon MS, Chun BH, Jeon CO, Eyun S, Seo Y-J, Kang HA (2022)  Genomic features, aroma profiles, and probiotic potential of the Debaryomyces hansenii species complex strains isolated from Korean soybean fermented food
  Food Microbiology 105:104011



• Cho C, Lee JS, Oh H, Kang LJ, Hwang Y, Chae S, Lee IJ, Kim SJ, Woo H, Eyun S, Kang HC, Choi WI, Yang S (2022)  Fructose-Derived Levan Nanoparticles Protect Against Osteoarthritis by Directly Blocking CD44 Activation
  Small 18:2202146



• Lee J, Ryu M, Bae D, Kim HM, Eyun S, Bae J, Lee K (2022)  Development of DNA aptamers specific for small therapeutic peptides using a modified SELEX method
  Journal of Microbiology 60:659-667
  
  
  
• Kim SL, Choi H, Eyun S, Kim D, Yu OH, (2022)  A new Branchipolynoe (Aphroditiformia: Polynoidae) scale worm from deep-sea hydrothermal vents in the Onnuri vent field on the northern Central Indian Ridge
  Zoological Studies 61:21



• Choi H, Kim SL, Jeong MK, Yu OH, Eyun S (2022)  Identification and Phylogenetic Analysis of Chitin Synthase genes from the Deep-Sea Polychaete Branchipolynoe onnuriensis Genome
  Journal of Marine Science and Engineering 10:598



• Yoon JH, Jeon MS, Eyun S, Seok YJ (2022)  Evidence for reciprocal evolution of the global repressor Mlc and its cognate phosphotransferase system sugar transporter
  Environmental Microbiology 24:122-136

2021

• Song C, Choi H, Jeon MS, Kim E, Jeong HG, Kim S, Kim C, Hwang H, Purnaningtyas DW, Lee S, Eyun S, Lee YH (2021)  Zooplankton diversity monitoring strategy for the urban coastal region using metabarcoding analysis
  Scientific Reports 11:24339



• Lee HM, Ren J, Yu MS, Kim H, Kim WY, Shen J, Yoo SM, Eyun S, Na D (2021)  Construction of a tunable promoter library to optimize gene expression in Methylomonas sp. DH-1, a methanotroph, and its application to cadaverine production
  Biotechnology for Biofuels 14:228



• Tran KM, Lee HM, Thai TD, Shen J, Eyun S, Na D (2021)  Synthetically engineered microbial scavengers for enhanced bioremediation
  Journal of Hazardous Materials 419:126516



• Lee HM, Ren J, Kim WY, Vo PNL, Eyun S, Na D (2021)  Introduction of an AU-rich Element into the 5' UTR of mRNAs Enhances Protein Expression in Escherichia coli by S1 Protein and Hfq Protein
  Biotechnology and Bioprocess Engineering 26:749-757



• Kang MH, Eyun S, Park YY (2021)  Estrogen-related receptor-gamma influences Helicobacter pylori infection by regulating TFF1 in gastric cancer
  Biochemical and Biophysical Research Communications 563:15-22



• Kwak HJ, Kim JH, Kim JY, Jeon D, Lee DH, Yoo S, Kim J, Eyun S, Park SC, Cho SJ (2021)  Behavioral variation according to feeding organ diversification in glossiphoniid leeches (Phylum: Annelida)
  Scientific Reports 11:10940



• Han SJ, Jun J, Eyun S, Lee CG, Jeon J, Pan CH (2021)  Schisandrol A suppresses catabolic factor expression by blocking NF-κB signaling in osteoarthritis
  Pharmaceuticals 14:241



• Seo YL, Jung J, Song C, Kwon YM, Jung HS, Eyun S, Jeon CO (2021)  Nonlabens ponticola sp. nov., isolated from seawater and reclassification of Nonlabens sediminis as a later heterotypic synonym of Nonlabens tegetincola
  International Journal of Systematic and Evolutionary Microbiology 71:4603

2020 and Before

• Jeon J, Noh HJ, Lee H, Park HH, Ha YJ, Park SH, Lee H, Kim SJ, Kang HC, Eyun S, Yang S, Kim YS (2020)  TRIM24-RIP3 axis perturbation accelerates osteoarthritis pathogenesis
  Annals of the Rheumatic Diseases 79:1635-1643



• Jung H, Ventura T, Chung JS, Kim WJ, Nam BH, Kong HJ, Kim YO, Jeon MS, Eyun S (2020)  Twelve quick steps for genome assembly and annotation in the classroom
  PLoS Computational Biology 16:e1008325
  (The top 10% of viewed papers in PLOS Computational Biology in 2022)



• Kim M, Lee A, Roh YJ, Lee H, Jo Y, Cho H, Choi DW, Choi M, Eyun S, Choi C, Chung N, Lee H, Lee BC (2020)  Gene expression and metabolomics profiling of the common wheat obtaining leaf rust resistance by salicylic or jasmonic acid through a novel detached leaf rust assay
  Agronomy 10:1668



• Shaker B, Ahmad S, Thai DT, Eyun S, Na D (2020)  Rational drug design for Pseudomonas aeruginosa PqsA enzyme: An in silico guided study to block biofilm formation
  Frontiers in Molecular Biosciences 7:577316



• Lee S, Kang HA, Eyun S (2020)  Evolutionary analysis and protein family classification of chitin deacetylases in Cryptococcus neoformans
  Journal of Microbiology 58:805-811
  ✪ Supplemental Materials



• Kim SJ, Ju JS, Kang MH, Won JE, Kim YH, Raninga P, Khanna KK, Györffy B, Pack CG, Han HD, Lee HJ, Gong G, Shin Y, Mills G, Eyun S, Park YY (2020)  RNA-binding protein NONO contributes to cancer cell growth and confers drug resistance as a theranostic target in TNBC
  Theranostics 10:7974-7992



• Jung H, Jeon MS, Hodgett M, Waterhouse P, Eyun S (2020)  Comparative evaluation of genome assemblers from long-read sequencing for plants and crops
  Journal of Agricultural and Food Chemistry 68:7670-7677



• Kang LJ, Oh E, Cho C, Kwon HK, Lee CG, Jeon J, Lee H, Choi S, Han SJ, Nam J, Song C, Jung H, Kim HY, Park EJ, Choi EJ, Kim J, Eyun S, Yang S (2020)  3ʹ-Sialyllactose prebiotics prevents skin inflammation via regulatory T cell differentiation in atopic dermatitis mouse models
  Scientific Reports 10:5603



• Jeon D, Lee W, Soh HY, Eyun S (2020)  A new species of Monstrillopsis Sars, 1921 (Copepoda: Monstrilloida) with an unusually reduced urosome
  Diversity 12:9



• Kim S, Cho YB, Song C, Eyun S, Seo YJ (2020)  Kinesin family member KIF18A is a critical cellular factor that regulates the differentiation and activation of dendritic cells
  Genes & Genomics 42:41-46



• Kim S, Jeon D, Lee JY, Cho SJ, Lim Y, Eyun S, Park SC, Seo YJ (2020)  Upregulation of cellulase activity and mRNA levels by bacterial challenge in the earthworm Eisenia andrei, supporting the involvement of cellulases in innate immunity
  Biochemical and Biophysical Research Communications 521:15-18



• Eyun S (2019)  Accelerated pseudogenization of trace amine-associated receptor genes in Primates
  Genes Brain and Behavior 18:e12543
  ✪ Supplemental Materials



• Cho C, Kang LJ, Jang D, Jeon J, Lee H, Choi S, Han SJ, Oh E, Nam J, Kim CS, Park E, Jeong SY, Park CH, Shin YS, Eyun S, Yang S (2019)  Cirsium japonicum var. maackii and apigenin block Hif-2α induced osteoarthritic cartilage destruction
  Journal of Cellular and Molecular Medicine 23:5369-5379



• Choi KM, Kim S, Kim S, Lee H, Kaya A, Chun B, Lee Y, Park T, Lee C, Eyun S, Lee B (2019)  Sulfate assimilation regulates hydrogen sulfide production independent of lifespan and reactive oxygen species under methionine restriction condition in yeast
  Aging 11:4254-426



• Song W, Joo M, Yeom JH, Shin E, Lee M, Choi HK, Hwang J, Kim YI, Seo R, Lee JE, Moore CJ, Kim YH, Eyun S, Hahn Y, Bae J, Lee K (2019)  Divergent rRNAs as regulators of gene expression at the ribosome level
  Nature Microbiology 4:515-526



• Vakati V, Eyun S, Lee W (2019)  Unraveling the intricate biodiversity of the benthic harpacticoid genus Nannopus (Copepoda, Harpacticoida, Nannopodidae) in Korean waters
  Molecular Phylogenetics and Evolution 130:366-379



• Hovde BT, Hanschen ER, Tyler CRS, Lo CC, Kunde Y, Davenport K, Daligault H, Msanne J, Canny S, Eyun S, Riethoven JJ, Polle J, Starkenburg SR (2018)  Genomic characterization reveals significant divergence within Chlorella sorokiniana (Chlorellales, Trebouxiophyceae)
  Algal Research 35:449-461



• Kopf JC, Suhr MJ, Clarke J, Eyun S, Riethoven JJ, Ramer-Tait AE, Rose DJ (2018)  Role of whole grains versus fruits and vegetables in reducing subclinical inflammation and promoting gastrointestinal health in individuals affected by overweight and obesity: a randomized controlled trial
  Nutrition Journal 17:72



• Khasin M, Cahoon R, Alvarez S, Beckeris R, Eyun S, Jia Q, Riethoven JJ, Nickerson KW, Riekhof WR (2017)  Synthesis, secretion, and perception of abscisic acid regulates stress responses in Chlorella sorokiniana
  (preprint) bioRxiv 180547



• Eyun S, Soh HY, Posavi M, Munro J, Hughes DST, Murali SC, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Park EO, Silva JC, Gibbs RA, Richards S, Lee CE (2017)  Evolutionary History of Chemosensory-Related Gene Families Across the Arthropoda
  Molecular Biology and Evolution 34:1838-1862
  ✪ Supplemental Materials
(Article Recommendations by in 2017)



• Wang H, Eyun S, Arora K, Tan SY, Gandra P, Moriyama EN, Khajuria C, Jurzenski J, Li H, Donahue M, Narva K, Siegfried BD (2017)  Patterns of Gene Expression in Western Corn Rootworm (Diabrotica virgifera virgifera) Neonates, Challenged with Cry34Ab1, Cry35Ab1 and Cry34/35Ab1, Based on Next Generation Sequencing
  Toxins 9:124



• Eyun S (2017)  Phylogenomic Analysis of Copepoda (Arthropoda, Crustacea) Reveals Unexpected Similarities with Earlier Proposed Morphological Phylogenies
  BMC Ecology and Evolution 17:23
  ✪ Supplemental Materials



• Eyun S, Moriyama H, Hoffman F, Moriyama EN (2016)  Molecular Evolution and Functional Divergence of Trace Amine-Associated Receptors
  PLoS ONE 11:e0151023
  ✪ Supplemental Materials



• Valencia A, Wang H, Soto A, Aristizabal M, Arboleda JW, Eyun S, Noriega DD, Siegfried BD (2016)  Pyrosequencing the Midgut Transcriptome of the Banana Weevil Cosmopolites sordidus (Germar) (Coleoptera: Curculionidae) Reveals Multiple Protease-like Transcripts
  PLoS ONE 11:e0151001



• Vellichirammal NN, Wang H, Eyun S, Moriyama EN, Coates BS, Miller NJ, Siegfried BD (2015)  Transcriptional Analysis of Susceptible and Resistant European Corn Borer Strains and Their Response to Cry1F Protoxin
  BMC Genomics 16:558



• Eyun S, Wang H, Pauchet Y, Ffrench-Constant RH, Benson AK, Valencia-Jiménez A, Moriyama EN, Siegfried BD (2014)  Molecular Evolution of Glycoside Hydrolase Genes in the Western Corn Rootworm (Diabrotica virgifera virgifera)
  PLoS ONE 9:e94052
  ✪ Supplemental Materials



• Prokupek AM, Eyun S, Ko L, Moriyama EN, Harshman LG (2010)  Molecular Evolutionary Analysis of Seminal Receptacle Sperm Storage Organ Genes of Drosophila melanogaster
  Journal of Evolutionary Biology 23:1386-1398



• Prokupek AM, Hoffman F, Eyun S, Moriyama EN, Zhou M, Harshman LG (2008)  An Evolutionary Expressed Sequence Tag Analysis of Drosophila Spermatheca Genes
  Evolution 62:2936-2947



• Eyun S, Lee YH, Suh HL, Kim S, Soh HY (2007)  Genetic Identification and Molecular Phylogeny of Pseudodiaptomus Species (Calanoida,Pseudodiaptomidae) in Korean Waters
  Zoological Science 24:265-271
  (Ranked as the "Most Read Articles" in 2012)