Evolutionary Analysis and Protein Family Classification of Chitin Deacetylase in Cryptococcus neoformans
Seungsue Lee, Hyun Ah Kang, Seong-il Eyun
Journal of Microbiology, 58:805
Figures and Table (Colored and High resolusion)
- Fig. 1. The maximum-likelihood phylogeny of chitin deacetylase and other carbohydrate esterase 4 family proteins.
- Fig. 2. Phylogenetic analysis of the protein family group and domain diagram.
- Fig. 3. Support vector machine (SVM) analysis of protein composition between CRP clade I and II.
- Fig. 4. The 3D structural model of Cda2 (green) superimposed with the fungal chitin deacetylase (CDA).
- Table 1. The number of protein sequences obtained from each procedure.
Supplementary Data
- Figures (Colored and High resolusion) -
- Fig. S1. Chemical structure of chitin, chitosan, and chitin-related enzymes
- Fig. S2. Secondary structure prediction and protein alignment.
"- Tables -"
- Table S1. Gene list using BLAST.
- Table S2 Sources of the proteins.
- Table S3 Evolutionary pressures in the phylogenetic groups.
- Table S4 Source organisms of the proteins in the study.
