Highly contiguous genome assembly and gene annotation of the short-finned eel (Anguilla bicolor pacifica)

Choi H, Nam J, Yang S, Eyun S

Scientific Data 11:952

— Figures and Tables (Colored and High resolution) —

• Figure 1. (a) Genomic landscape of the assembled pseudochromosomes of Anguilla bicolor pacifica, featuring thick marks every 10 Mb including the gene density (red), and GC content (green) calculated using a 100 Kb sliding window approach. (b) Syntenic dot plots of the whole genome of A. bicolor pacifica against A. japonica. The x- and y-axes represent the 19 pseudochromosomes of the A. bicolor pacifica and chromosomes A. japonica genomes, respectively.






• Table 1. Statistical results for the sequencing data of the Anguilla bicolor pacifica.






• Table 2. Statistical results of Anguilla bicolor pacifica genome assembly.






• Table 3. Statistical results of the 19 pseudochromosomes of Anguilla bicolor pacifica.






• Table 4. Comparative analysis of the genomes of six anguillids and Anguilla bicolor pacifica.






• Table 5. Statistics of repetitive sequences in the genome of Anguilla bicolor pacifica.






• Table 6. Protein coding genes statistics and functional annotation results of the Anguilla bicolor pacifica genome.

— Supporting Information (Colored and High resolution) —

• Figure S1. Sex identification markers were used for determining the sex of Anguilla bicolor pacifica. Actin was utilized for calibration purpose.






• Figure S2. Genome size estimated by GenomeScope2 (http://qb.cshl.edu/genomescope/genomescope2.0) using k-mer size 21 generated by jellyfish (ver. 2.3.0). The two peaks at 16 and 32 represent homozygous and heterozygous peaks, respectively.






• Table S1. BLASTN similarity search result using CO1 nucleotide sequence from our sample against NCBI database.